Index

Symbols

--charge_model command line option --cpu command line option --debug command line option --energy_threshold command line option --etkdg_rng_seed command line option --ff command line option --keep_all_frags command line option --max_ff_iter command line option --min_output_confs command line option --name_from_prop command line option --num_etkdg_attempts command line option --num_internal_confs command line option --out_fname command line option --ph command line option --ph_low/--ph_high command line option --pka_fname command line option

--pka_model command line option --ring_minimize command line option --skip_acidbase command line option --skip_etkdg command line option --skip_gen3d command line option --skip_ringfix command line option --skip_tautomers command line option --tauto_fname command line option --template command line option --template_smarts command line option --use_random_coords command line option --wcg command line option --write_failed_mols command line option -h command line option -o command line option

C

command line option --charge_model --cpu --debug --energy_threshold --etkdg_rng_seed --ff --keep_all_frags --max_ff_iter --min_output_confs --name_from_prop --num_etkdg_attempts --num_internal_confs --out_fname --ph --ph_low/--ph_high --pka_fname --pka_model --ring_minimize --skip_acidbase --skip_etkdg --skip_gen3d --skip_ringfix --skip_tautomers --tauto_fname --template --template_smarts --use_random_coords --wcg --write_failed_mols -h -o espaloma] etr1] INPUT mmff94 mmff94s nagl]

E

espaloma] command line option

etr1] command line option

I

INPUT command line option

M

mmff94 command line option

mmff94s command line option

N

nagl] command line option